Judith Somekh

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      Dr. Judith Somekh

 

 

 

 

My CV

 

Refereed Journal Publications

  • Judith Somekh, Mordechai Choder, and Dov Dori, “Conceptual Model-Based  Systems Biology: Mapping Knowledge and Discovering Gaps in the mRNA Transcription Cycle”. PLoS ONE,
    7(12): e51430. doi:10.1371/journal.pone.0051430, Dec. 20, 2012
  • Mor Peleg, Judith Somekh, and Dov Dori, A Methodology for Eliciting and Modeling Exceptions. Journal of Biomedical Informatics 42(4), pp. 736-747, 2009.

Conferences

  • Valeria Perelman, Judith Somekh, and Dov Dori, Model Verification Framework with Application to Molecular Biology, Symposium on Theory of Modeling and Simulation (DEVS 2011), March 2011, Boston, MA, USA.
  • Judith Somekh, Dov Dori, and Mordechai Choder, Modeling Complex biological Systems with Object-Process Methodology, INCOSE 2011, March 2011, Herzeliya, Israel.
  • Judith Somekh, Dov Dori, and Mordechai Choder, Conceptual Modeling of Biological Systems, Presented at the Doctoral Symposium track at the IEEE, International Conference on Software – Science, Technology, and Engineering (SwSTE’10), June 2010, Herzeliya, Israel.
  • Judith Somekh, Dov Dori, and Mor Peleg, Classifying and Modeling Exceptions through Object Process Methodology. International Conference on Systems Engineering and Modeling – ICSEM’07, March 20-23, 2007 Technion, Israel.
  • Judith Somekh, Dov Dori, and Mor Peleg, Classifying and Modeling Exceptions through Object Process Methodology. Paper presented at Israel Association for Information Systems - ILAIS Conference, October 15-16, 2006, University of Haifa, Israel.

Biological Models and OPCAT tool

1. Download OPCAT executable tool

2. Executable Transcription Cycle Model

3. Transcription Cycle Execution Record

4. mRNA Decay, Nucear Import and Transcription Model (Zip format)